Marta Kulik

tel: (48) 22 55 266 42
e-mail: marta.kulik/at/
Biological and Chemical Research Centre
Żwirki i Wigury 101
02-089 Warsaw, Poland
room: 3.131
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Budniak UA, Karolak NK, Kulik M, Młynarczyk K, Górna MW, Dominiak PM
The Role of Electrostatic Interactions in IFIT5-RNA Complexes Predicted by the UBDB+EPMM Method
J. Phys. Chem. B., 126, 45, 9152–9167, Published: 2022
Kulik M, Dominiak PM
Electron density is not spherical: the many applications of the transferable aspherical atom model
Computational and Structural Biotechnology Journal, 20, 6237-6243, Published: 2022
[DOI: 10.1016/j.csbj.2022.10.018]
Rybicka PM, Kulik M, Chodkiewicz ML, Dominiak PM
Multipolar Atom Types from Theory and Statistical Clustering (MATTS) Data Bank: Impact of Surrounding Atoms on Electron Density from Cluster Analysis
J. Chem. Inf. Model., 62 (16), 3766–3783, Published: 2022
[DOI: 10.1021/acs.jcim.2c00145]
Kulik M, Chodkiewicz ML, Dominiak PM
Theoretical 3D ED electrostatic potential density maps of proteins modeled with multipolar pseudoatom data bank
Acta Crystallographica Section D Structural Biology, 78 (8), 1010–1020, Published: 2022
[DOI: 10.1107/S2059798322005836]
Nishima W, Kulik M
Full-Length Computational Model of the SARS-CoV-2 Spike Protein and Its Implications for a Viral Membrane Fusion Mechanism
Viruses 13(6), 1126, Published: 2021
[DOI: 10.3390/v13061126]
Chyży P, Kulik M, Re S, Sugita Y, Trylska J
Mutations of N1 Riboswitch Affect its Dynamics and Recognition by Neomycin Through Conformational Selection
Frontiers in Molecular Biosciences, 8, 633130, Published: 2021
[DOI: 10.3389/fmolb.2021.633130]
Kulik M, Mori T, Sugita Y
Multi-Scale Flexible Fitting of Proteins to Cryo-EM Density Maps at Medium Resolution
Frontiers in Molecular Biosciences, 8, 631854, Published: 2021
[DOI: 10.3389/FMOLB.2021.631854]
Brunner JS, Vogel A, Lercher A, Caldera M, Korosec A, Pühringer M, Hofmann M, Hajto A, Kieler M, Garrido LQ, Kerndl M, Kuttke M, Mesteri I, Górna MW, Kulik M, Dominiak PM, Brandon AE, Estevez E, Egan CL, Gruber F, Schweiger M, Menche J, Bergthaler A, Weichhart T, Klavins K, Febbraio MA, Sharif O, Schabbauer G
The PI3K pathway preserves metabolic health through MARCO-dependent lipid uptake by adipose tissue macrophages
Nature Metabolism, Published: 2020
[DOI: 10.1038/s42255-020-00311-5]
Mori T, Kulik M, Miyashita O, Jung J, Tama F, Sugita Y
Acceleration of cryo-EM Flexible Fitting for Large Biomolecular Systems by Efficient Space Partitioning
Structure, 27, 1, 161-174.e3, Published: 2018
[DOI: 10.1016/j.str.2018.09.004]
Kulik M, Mori T, Sugita Y, Trylska J
Molecular mechanisms for dynamic regulation of N1 riboswitch by aminoglycosides
Nucleic Acids Research, 46 (19), 9960-9970, Published: 2018
[DOI: 10.1093/nar/gky833]
Jasiński M, Kulik M, Wojciechowska M, Stolarski R, Trylska J
Interactions of 2′-O-methyl oligoribonucleotides with the RNA models of the 30S subunit A-site
PloS one, 13 (1), e0191138, Published: 2018
[DOI: 10.1371/journal.pone.0191138]
Kulik M, Markowska-Zagrajek A, Wojciechowska M, Grzela R, Wituła T, Trylska J
Helix 69 of Escherichia coli 23S ribosomal RNA as a peptide nucleic acid target
Biochimie, 138, 32-42, Published: 2017
[DOI: 10.1016/j.biochi.2017.04.001]
Trylska J, Kulik M
Interactions of aminoglycoside antibiotics with rRNA
Biochemical Society Transactions, 44 (4), 987-993, Published: 2016
[DOI: 10.1042/BST20160087]
Kulik M, Goral AM, Jasiński M, Dominiak PM, Trylska J
Electrostatic interactions in aminoglycoside-RNA complexes
Biophysical Journal, 108 (3), 655-665, Published: 2015
[DOI: 10.1016/j.bpj.2014.12.020]

Kulik M, Trylska J
Structural and energetic comparison of the complexes of aminoglycosides with the model of the ribosomal A-site
RAIRO – Operations Research, 50 (4-5), 375-386, Published: 2015
[DOI: 10.1051/ro/2015041]
Kulik M, Pazio A, Wozniak K
Bis(l-serinium) oxalate dihydrate: polymorph II
Acta Crystallographica Section E: Structure Reports Online, 69 (11), o1667-o1668, Published: 2013
[DOI: 10.1107/S160053681302727X]